Implement "Isolate" commands

Commands that run alone one by one on reading and writing the file
This should be used on commands that will modify a large part of the
file (or generally large parts)
Since that can fuck up the indices of other commands when ran together

main.go

@@ -110,7 +110,7 @@ func main() {
 	// This aggregation is great but what if one modification replaces the whole entire file?
 	// Shit......
 	// TODO: Add "Isolate" field to modifications which makes them run alone
-	for file, commands := range associations {
+	for file, association := range associations {
 		workers <- struct{}{}
 		wg.Add(1)
 		logger.SafeGoWithArgs(func(args ...interface{}) {
@@ -120,6 +120,39 @@ func main() {
 			// Track per-file processing time
 			fileStartTime := time.Now()
 
+			for _, isolateCommand := range association.IsolateCommands {
+				fileData, err := os.ReadFile(file)
+				if err != nil {
+					logger.Error("Failed to read file %q: %v", file, err)
+					return
+				}
+				logger.Trace("Loaded %d bytes of data for file %q", len(fileData), file)
+				fileDataStr := string(fileData)
+
+				logger.Info("Processing file %q with isolate command %q", file, isolateCommand.Regex)
+				modifications, err := processor.ProcessRegex(fileDataStr, isolateCommand, file)
+				if err != nil {
+					logger.Error("Failed to process file %q with isolate command %q: %v", file, isolateCommand.Regex, err)
+					return
+				}
+
+				if len(modifications) == 0 {
+					logger.Info("No modifications found for file %q", file)
+					return
+				}
+
+				fileDataStr, count := utils.ExecuteModifications(modifications, fileDataStr)
+
+				fileMutex.Lock()
+				stats.ProcessedFiles++
+				stats.TotalModifications += count
+				fileMutex.Unlock()
+
+				logger.Info("Executed %d isolate modifications for file %q", count, file)
+
+				err = os.WriteFile(file, []byte(fileDataStr), 0644)
+			}
+
 			fileData, err := os.ReadFile(file)
 			if err != nil {
 				logger.Error("Failed to read file %q: %v", file, err)
@@ -130,14 +163,14 @@ func main() {
 
 			// Aggregate all the modifications and execute them
 			modifications := []utils.ReplaceCommand{}
-			for _, command := range commands {
+			for _, command := range association.Commands {
 				logger.Info("Processing file %q with command %q", file, command.Regex)
-				commands, err := processor.ProcessRegex(fileDataStr, command, file)
+				newModifications, err := processor.ProcessRegex(fileDataStr, command, file)
 				if err != nil {
 					logger.Error("Failed to process file %q with command %q: %v", file, command.Regex, err)
 					return
 				}
-				modifications = append(modifications, commands...)
+				modifications = append(modifications, newModifications...)
 				// It is not guranteed that all the commands will be executed...
 				// TODO: Make this better
 				// We'd have to pass the map to executemodifications or something...
@@ -145,7 +178,7 @@ func main() {
 				if !ok {
 					count = 0
 				}
-				stats.ModificationsPerCommand.Store(command.Name, count.(int)+len(commands))
+				stats.ModificationsPerCommand.Store(command.Name, count.(int)+len(newModifications))
 			}
 
 			if len(modifications) == 0 {

utils/modifycommand.go

@@ -18,6 +18,7 @@ type ModifyCommand struct {
 	Git      bool     `yaml:"git"`
 	Reset    bool     `yaml:"reset"`
 	LogLevel string   `yaml:"loglevel"`
+	Isolate  bool     `yaml:"isolate"`
 }
 type CookFile []ModifyCommand
 
@@ -39,6 +40,7 @@ func (c *ModifyCommand) Validate() error {
 
 // Ehh.. Not much better... Guess this wasn't the big deal
 var matchesMemoTable map[string]bool = make(map[string]bool)
+
 func Matches(path string, glob string) (bool, error) {
 	key := fmt.Sprintf("%s:%s", path, glob)
 	if matches, ok := matchesMemoTable[key]; ok {
@@ -53,10 +55,22 @@ func Matches(path string, glob string) (bool, error) {
 	return matches, nil
 }
 
-func AssociateFilesWithCommands(files []string, commands []ModifyCommand) (map[string][]ModifyCommand, error) {
+type FileCommandAssociation struct {
+	File            string
+	IsolateCommands []ModifyCommand
+	Commands        []ModifyCommand
+}
+
+func AssociateFilesWithCommands(files []string, commands []ModifyCommand) (map[string]FileCommandAssociation, error) {
 	associationCount := 0
-	fileCommands := make(map[string][]ModifyCommand)
+	fileCommands := make(map[string]FileCommandAssociation)
+
 	for _, file := range files {
+		fileCommands[file] = FileCommandAssociation{
+			File:            file,
+			IsolateCommands: []ModifyCommand{},
+			Commands:        []ModifyCommand{},
+		}
 		for _, command := range commands {
 			for _, glob := range command.Files {
 				matches, err := Matches(file, glob)
@@ -66,15 +80,25 @@ func AssociateFilesWithCommands(files []string, commands []ModifyCommand) (map[s
 				}
 				if matches {
 					logger.Debug("Found match for file %q and command %q", file, command.Regex)
-					fileCommands[file] = append(fileCommands[file], command)
+					association := fileCommands[file]
+
+					if command.Isolate {
+						association.IsolateCommands = append(association.IsolateCommands, command)
+					} else {
+						association.Commands = append(association.Commands, command)
+					}
+					fileCommands[file] = association
 					associationCount++
 				}
 			}
 		}
-		logger.Debug("Found %d commands for file %q", len(fileCommands[file]), file)
-		if len(fileCommands[file]) == 0 {
+		logger.Debug("Found %d commands for file %q", len(fileCommands[file].Commands), file)
+		if len(fileCommands[file].Commands) == 0 {
 			logger.Info("No commands found for file %q", file)
 		}
+		if len(fileCommands[file].IsolateCommands) > 0 {
+			logger.Info("Found %d isolate commands for file %q", len(fileCommands[file].IsolateCommands), file)
+		}
 	}
 	logger.Info("Found %d associations between %d files and %d commands", associationCount, len(files), len(commands))
 	return fileCommands, nil
@@ -234,4 +258,4 @@ func FilterCommands(commands []ModifyCommand, filter string) []ModifyCommand {
 		}
 	}
 	return filteredCommands
-}
+}