Remove logger and replace it with a library

It's really not necessary

.vscode/launch.json

@@ -12,11 +12,10 @@
 			"program": "${workspaceFolder}",
 			"cwd": "C:/Users/Administrator/Seafile/Games-Barotrauma",
 			"args": [
-				"loglevel",
+				"-loglevel",
 				"trace",
-				"(?-s)LightComponent!anyrange=\"(!num)\"",
+				"-cook",
-				"*4",
+				"*.yml",
-				"**/Outpost*.xml"
 			]
 		},
 		{
@@ -33,6 +32,28 @@
 				"cookassistant.yml",
 			]
 		},
+		{
+			"name": "Launch Package (Quasimorph cookfile)",
+			"type": "go",
+			"request": "launch",
+			"mode": "auto",
+			"program": "${workspaceFolder}",
+			"cwd": "C:/Users/Administrator/Seafile/Games-Quasimorph",
+			"args": [
+				"cook.yml",
+			]
+		},
+		{
+			"name": "Launch Package (Rimworld cookfile)",
+			"type": "go",
+			"request": "launch",
+			"mode": "auto",
+			"program": "${workspaceFolder}",
+			"cwd": "C:/Users/Administrator/Seafile/Games-Rimworld/294100",
+			"args": [
+				"cookVehicles.yml",
+			]
+		},
 		{
 			"name": "Launch Package (Workspace)",
 			"type": "go",
@@ -40,11 +61,7 @@
 			"mode": "auto",
 			"program": "${workspaceFolder}",
 			"args": [
-				"-loglevel",
+				"tester.yml",
-				"trace",
-				"(?-s)LightComponent!anyrange=\"(!num)\"",
-				"*4",
-				"**/Outpost*.xml"
 			]
 		}
 	]

cmd/log_format_test/main.go

@@ -1,8 +1,9 @@
 package main
 
 import (
-	"modify/logger"
 	"time"
+
+	logger "git.site.quack-lab.dev/dave/cylogger"
 )
 
 func main() {

go.mod

@@ -1,8 +1,9 @@
-module modify
+module cook
 
-go 1.24.1
+go 1.24.2
 
 require (
+	git.site.quack-lab.dev/dave/cylogger v1.1.1
 	github.com/bmatcuk/doublestar/v4 v4.8.1
 	github.com/stretchr/testify v1.10.0
 	github.com/yuin/gopher-lua v1.1.1

go.sum

@@ -1,5 +1,7 @@
 dario.cat/mergo v1.0.0 h1:AGCNq9Evsj31mOgNPcLyXc+4PNABt905YmuqPYYpBWk=
 dario.cat/mergo v1.0.0/go.mod h1:uNxQE+84aUszobStD9th8a29P2fMDhsBdgRYvZOxGmk=
+git.site.quack-lab.dev/dave/cylogger v1.1.1 h1:LQZaigVKUo07hGbS/ZTKiR+l7j4Z2eNf13zsljednNU=
+git.site.quack-lab.dev/dave/cylogger v1.1.1/go.mod h1:VS9MI4Y/cwjCBZgel7dSfCQlwtAgHmfvixOoBgBhtKg=
 github.com/Microsoft/go-winio v0.5.2/go.mod h1:WpS1mjBmmwHBEWmogvA2mj8546UReBk4v8QkMxJ6pZY=
 github.com/Microsoft/go-winio v0.6.2 h1:F2VQgta7ecxGYO8k3ZZz3RS8fVIXVxONVUPlNERoyfY=
 github.com/Microsoft/go-winio v0.6.2/go.mod h1:yd8OoFMLzJbo9gZq8j5qaps8bJ9aShtEA8Ipt1oGCvU=

logger/logger.go

@@ -1,465 +0,0 @@
-package logger
-
-import (
-	"bytes"
-	"fmt"
-	"io"
-	"log"
-	"os"
-	"path/filepath"
-	"runtime"
-	"strconv"
-	"strings"
-	"sync"
-	"time"
-)
-
-// LogLevel defines the severity of log messages
-type LogLevel int
-
-const (
-	// LevelError is for critical errors that should always be displayed
-	LevelError LogLevel = iota
-	// LevelWarning is for important warnings
-	LevelWarning
-	// LevelInfo is for informational messages
-	LevelInfo
-	// LevelDebug is for detailed debugging information
-	LevelDebug
-	// LevelTrace is for very detailed tracing information
-	LevelTrace
-	// LevelLua is specifically for output from Lua scripts
-	LevelLua
-)
-
-var levelNames = map[LogLevel]string{
-	LevelError:   "ERROR",
-	LevelWarning: "WARNING",
-	LevelInfo:    "INFO",
-	LevelDebug:   "DEBUG",
-	LevelTrace:   "TRACE",
-	LevelLua:     "LUA",
-}
-
-var levelColors = map[LogLevel]string{
-	LevelError:   "\033[1;31m", // Bold Red
-	LevelWarning: "\033[1;33m", // Bold Yellow
-	LevelInfo:    "\033[1;32m", // Bold Green
-	LevelDebug:   "\033[1;36m", // Bold Cyan
-	LevelTrace:   "\033[1;35m", // Bold Magenta
-	LevelLua:     "\033[1;34m", // Bold Blue
-}
-
-// ResetColor is the ANSI code to reset text color
-const ResetColor = "\033[0m"
-
-// Logger is our custom logger with level support
-type Logger struct {
-	mu            sync.Mutex
-	out           io.Writer
-	currentLevel  LogLevel
-	prefix        string
-	flag          int
-	useColors     bool
-	callerOffset  int
-	defaultFields map[string]interface{}
-	showGoroutine bool
-}
-
-var (
-	// DefaultLogger is the global logger instance
-	DefaultLogger *Logger
-	// defaultLogLevel is the default log level if not specified
-	defaultLogLevel = LevelInfo
-	// Global mutex for DefaultLogger initialization
-	initMutex sync.Mutex
-)
-
-// ParseLevel converts a string log level to LogLevel
-func ParseLevel(levelStr string) LogLevel {
-	switch strings.ToUpper(levelStr) {
-	case "ERROR":
-		return LevelError
-	case "WARNING", "WARN":
-		return LevelWarning
-	case "INFO":
-		return LevelInfo
-	case "DEBUG":
-		return LevelDebug
-	case "TRACE":
-		return LevelTrace
-	case "LUA":
-		return LevelLua
-	default:
-		return defaultLogLevel
-	}
-}
-
-// String returns the string representation of the log level
-func (l LogLevel) String() string {
-	if name, ok := levelNames[l]; ok {
-		return name
-	}
-	return fmt.Sprintf("Level(%d)", l)
-}
-
-// New creates a new Logger instance
-func New(out io.Writer, prefix string, flag int) *Logger {
-	return &Logger{
-		out:           out,
-		currentLevel:  defaultLogLevel,
-		prefix:        prefix,
-		flag:          flag,
-		useColors:     true,
-		callerOffset:  0,
-		defaultFields: make(map[string]interface{}),
-		showGoroutine: true,
-	}
-}
-
-// Init initializes the DefaultLogger
-func Init(level LogLevel) {
-	initMutex.Lock()
-	defer initMutex.Unlock()
-
-	if DefaultLogger == nil {
-		DefaultLogger = New(os.Stdout, "", log.Lmicroseconds|log.Lshortfile)
-	}
-	DefaultLogger.SetLevel(level)
-}
-
-// SetLevel sets the current log level
-func (l *Logger) SetLevel(level LogLevel) {
-	l.mu.Lock()
-	defer l.mu.Unlock()
-	l.currentLevel = level
-}
-
-// GetLevel returns the current log level
-func (l *Logger) GetLevel() LogLevel {
-	l.mu.Lock()
-	defer l.mu.Unlock()
-	return l.currentLevel
-}
-
-// SetCallerOffset sets the caller offset for correct file and line reporting
-func (l *Logger) SetCallerOffset(offset int) {
-	l.mu.Lock()
-	defer l.mu.Unlock()
-	l.callerOffset = offset
-}
-
-// SetShowGoroutine sets whether to include goroutine ID in log messages
-func (l *Logger) SetShowGoroutine(show bool) {
-	l.mu.Lock()
-	defer l.mu.Unlock()
-	l.showGoroutine = show
-}
-
-// ShowGoroutine returns whether goroutine ID is included in log messages
-func (l *Logger) ShowGoroutine() bool {
-	l.mu.Lock()
-	defer l.mu.Unlock()
-	return l.showGoroutine
-}
-
-// WithField adds a field to the logger's context
-func (l *Logger) WithField(key string, value interface{}) *Logger {
-	newLogger := &Logger{
-		out:           l.out,
-		currentLevel:  l.currentLevel,
-		prefix:        l.prefix,
-		flag:          l.flag,
-		useColors:     l.useColors,
-		callerOffset:  l.callerOffset,
-		defaultFields: make(map[string]interface{}),
-		showGoroutine: l.showGoroutine,
-	}
-
-	// Copy existing fields
-	for k, v := range l.defaultFields {
-		newLogger.defaultFields[k] = v
-	}
-
-	// Add new field
-	newLogger.defaultFields[key] = value
-	return newLogger
-}
-
-// WithFields adds multiple fields to the logger's context
-func (l *Logger) WithFields(fields map[string]interface{}) *Logger {
-	newLogger := &Logger{
-		out:           l.out,
-		currentLevel:  l.currentLevel,
-		prefix:        l.prefix,
-		flag:          l.flag,
-		useColors:     l.useColors,
-		callerOffset:  l.callerOffset,
-		defaultFields: make(map[string]interface{}),
-		showGoroutine: l.showGoroutine,
-	}
-
-	// Copy existing fields
-	for k, v := range l.defaultFields {
-		newLogger.defaultFields[k] = v
-	}
-
-	// Add new fields
-	for k, v := range fields {
-		newLogger.defaultFields[k] = v
-	}
-	return newLogger
-}
-
-// GetGoroutineID extracts the goroutine ID from the runtime stack
-func GetGoroutineID() string {
-	buf := make([]byte, 64)
-	n := runtime.Stack(buf, false)
-	// Format of first line is "goroutine N [state]:"
-	// We only need the N part
-	buf = buf[:n]
-	idField := bytes.Fields(bytes.Split(buf, []byte{':'})[0])[1]
-	return string(idField)
-}
-
-// formatMessage formats a log message with level, time, file, and line information
-func (l *Logger) formatMessage(level LogLevel, format string, args ...interface{}) string {
-	var msg string
-	if len(args) > 0 {
-		msg = fmt.Sprintf(format, args...)
-	} else {
-		msg = format
-	}
-
-	// Format default fields if any
-	var fields string
-	if len(l.defaultFields) > 0 {
-		var pairs []string
-		for k, v := range l.defaultFields {
-			pairs = append(pairs, fmt.Sprintf("%s=%v", k, v))
-		}
-		fields = " " + strings.Join(pairs, " ")
-	}
-
-	var levelColor, resetColor string
-	if l.useColors {
-		levelColor = levelColors[level]
-		resetColor = ResetColor
-	}
-
-	var caller string
-	if l.flag&log.Lshortfile != 0 || l.flag&log.Llongfile != 0 {
-		// Find the actual caller by scanning up the stack
-		// until we find a function outside the logger package
-		var file string
-		var line int
-		var ok bool
-
-		// Start at a reasonable depth and scan up to 10 frames
-		for depth := 4; depth < 15; depth++ {
-			_, file, line, ok = runtime.Caller(depth)
-			if !ok {
-				break
-			}
-
-			// If the caller is not in the logger package, we found our caller
-			if !strings.Contains(file, "logger/logger.go") {
-				break
-			}
-		}
-
-		if !ok {
-			file = "???"
-			line = 0
-		}
-
-		if l.flag&log.Lshortfile != 0 {
-			file = filepath.Base(file)
-		}
-		caller = fmt.Sprintf("%-25s ", file+":"+strconv.Itoa(line))
-	}
-
-	// Format the timestamp with fixed width
-	var timeStr string
-	if l.flag&(log.Ldate|log.Ltime|log.Lmicroseconds) != 0 {
-		t := time.Now()
-		if l.flag&log.Ldate != 0 {
-			timeStr += fmt.Sprintf("%04d/%02d/%02d ", t.Year(), t.Month(), t.Day())
-		}
-		if l.flag&(log.Ltime|log.Lmicroseconds) != 0 {
-			timeStr += fmt.Sprintf("%02d:%02d:%02d", t.Hour(), t.Minute(), t.Second())
-			if l.flag&log.Lmicroseconds != 0 {
-				timeStr += fmt.Sprintf(".%06d", t.Nanosecond()/1000)
-			}
-		}
-		timeStr = fmt.Sprintf("%-15s ", timeStr)
-	}
-
-	// Add goroutine ID if enabled, with fixed width
-	var goroutineStr string
-	if l.showGoroutine {
-		goroutineID := GetGoroutineID()
-		goroutineStr = fmt.Sprintf("[g:%-4s] ", goroutineID)
-	}
-
-	// Create a colored level indicator with both brackets colored
-	levelStr := fmt.Sprintf("%s[%s]%s", levelColor, levelNames[level], levelColor)
-	// Add a space after the level and before the reset color
-	levelColumn := fmt.Sprintf("%s %s", levelStr, resetColor)
-
-	return fmt.Sprintf("%s%s%s%s%s%s%s\n",
-		l.prefix, timeStr, caller, goroutineStr, levelColumn, msg, fields)
-}
-
-// log logs a message at the specified level
-func (l *Logger) log(level LogLevel, format string, args ...interface{}) {
-	// Always show LUA level logs regardless of the current log level
-	if level != LevelLua && level > l.currentLevel {
-		return
-	}
-
-	l.mu.Lock()
-	defer l.mu.Unlock()
-
-	msg := l.formatMessage(level, format, args...)
-	fmt.Fprint(l.out, msg)
-}
-
-// Error logs an error message
-func (l *Logger) Error(format string, args ...interface{}) {
-	l.log(LevelError, format, args...)
-}
-
-// Warning logs a warning message
-func (l *Logger) Warning(format string, args ...interface{}) {
-	l.log(LevelWarning, format, args...)
-}
-
-// Info logs an informational message
-func (l *Logger) Info(format string, args ...interface{}) {
-	l.log(LevelInfo, format, args...)
-}
-
-// Debug logs a debug message
-func (l *Logger) Debug(format string, args ...interface{}) {
-	l.log(LevelDebug, format, args...)
-}
-
-// Trace logs a trace message
-func (l *Logger) Trace(format string, args ...interface{}) {
-	l.log(LevelTrace, format, args...)
-}
-
-// Lua logs a Lua message
-func (l *Logger) Lua(format string, args ...interface{}) {
-	l.log(LevelLua, format, args...)
-}
-
-// Global log functions that use DefaultLogger
-
-// Error logs an error message using the default logger
-func Error(format string, args ...interface{}) {
-	if DefaultLogger == nil {
-		Init(defaultLogLevel)
-	}
-	DefaultLogger.Error(format, args...)
-}
-
-// Warning logs a warning message using the default logger
-func Warning(format string, args ...interface{}) {
-	if DefaultLogger == nil {
-		Init(defaultLogLevel)
-	}
-	DefaultLogger.Warning(format, args...)
-}
-
-// Info logs an informational message using the default logger
-func Info(format string, args ...interface{}) {
-	if DefaultLogger == nil {
-		Init(defaultLogLevel)
-	}
-	DefaultLogger.Info(format, args...)
-}
-
-// Debug logs a debug message using the default logger
-func Debug(format string, args ...interface{}) {
-	if DefaultLogger == nil {
-		Init(defaultLogLevel)
-	}
-	DefaultLogger.Debug(format, args...)
-}
-
-// Trace logs a trace message using the default logger
-func Trace(format string, args ...interface{}) {
-	if DefaultLogger == nil {
-		Init(defaultLogLevel)
-	}
-	DefaultLogger.Trace(format, args...)
-}
-
-// Lua logs a Lua message using the default logger
-func Lua(format string, args ...interface{}) {
-	if DefaultLogger == nil {
-		Init(defaultLogLevel)
-	}
-	DefaultLogger.Lua(format, args...)
-}
-
-// LogPanic logs a panic error and its stack trace
-func LogPanic(r interface{}) {
-	if DefaultLogger == nil {
-		Init(defaultLogLevel)
-	}
-	stack := make([]byte, 4096)
-	n := runtime.Stack(stack, false)
-	DefaultLogger.Error("PANIC: %v\n%s", r, stack[:n])
-}
-
-// SetLevel sets the log level for the default logger
-func SetLevel(level LogLevel) {
-	if DefaultLogger == nil {
-		Init(level)
-		return
-	}
-	DefaultLogger.SetLevel(level)
-}
-
-// GetLevel gets the log level for the default logger
-func GetLevel() LogLevel {
-	if DefaultLogger == nil {
-		Init(defaultLogLevel)
-	}
-	return DefaultLogger.GetLevel()
-}
-
-// WithField returns a new logger with the field added to the default logger's context
-func WithField(key string, value interface{}) *Logger {
-	if DefaultLogger == nil {
-		Init(defaultLogLevel)
-	}
-	return DefaultLogger.WithField(key, value)
-}
-
-// WithFields returns a new logger with the fields added to the default logger's context
-func WithFields(fields map[string]interface{}) *Logger {
-	if DefaultLogger == nil {
-		Init(defaultLogLevel)
-	}
-	return DefaultLogger.WithFields(fields)
-}
-
-// SetShowGoroutine enables or disables goroutine ID display in the default logger
-func SetShowGoroutine(show bool) {
-	if DefaultLogger == nil {
-		Init(defaultLogLevel)
-	}
-	DefaultLogger.SetShowGoroutine(show)
-}
-
-// ShowGoroutine returns whether goroutine ID is included in default logger's messages
-func ShowGoroutine() bool {
-	if DefaultLogger == nil {
-		Init(defaultLogLevel)
-	}
-	return DefaultLogger.ShowGoroutine()
-}

logger/panic_handler.go

@@ -1,49 +0,0 @@
-package logger
-
-import (
-	"fmt"
-	"runtime/debug"
-)
-
-// PanicHandler handles a panic and logs it
-func PanicHandler() {
-	if r := recover(); r != nil {
-		goroutineID := GetGoroutineID()
-		stackTrace := debug.Stack()
-		Error("PANIC in goroutine %s: %v\n%s", goroutineID, r, stackTrace)
-	}
-}
-
-// SafeGo launches a goroutine with panic recovery
-// Usage: logger.SafeGo(func() { ... your code ... })
-func SafeGo(f func()) {
-	go func() {
-		defer PanicHandler()
-		f()
-	}()
-}
-
-// SafeGoWithArgs launches a goroutine with panic recovery and passes arguments
-// Usage: logger.SafeGoWithArgs(func(arg1, arg2 interface{}) { ... }, "value1", 42)
-func SafeGoWithArgs(f func(...interface{}), args ...interface{}) {
-	go func() {
-		defer PanicHandler()
-		f(args...)
-	}()
-}
-
-// SafeExec executes a function with panic recovery
-// Useful for code that should not panic
-func SafeExec(f func()) (err error) {
-	defer func() {
-		if r := recover(); r != nil {
-			goroutineID := GetGoroutineID()
-			stackTrace := debug.Stack()
-			Error("PANIC in goroutine %s: %v\n%s", goroutineID, r, stackTrace)
-			err = fmt.Errorf("panic recovered: %v", r)
-		}
-	}()
-
-	f()
-	return nil
-}

main.go

@@ -4,15 +4,16 @@ import (
 	"flag"
 	"fmt"
 	"os"
+	"sort"
 	"sync"
 	"time"
 
-	"modify/processor"
+	"cook/processor"
-	"modify/utils"
+	"cook/utils"
 
 	"github.com/go-git/go-git/v5"
 
-	"modify/logger"
+	logger "git.site.quack-lab.dev/dave/cylogger"
 )
 
 type GlobalStats struct {
@@ -20,14 +21,14 @@ type GlobalStats struct {
 	TotalModifications      int
 	ProcessedFiles          int
 	FailedFiles             int
-	ModificationsPerCommand map[string]int
+	ModificationsPerCommand sync.Map
 }
 
 var (
 	repo     *git.Repository
 	worktree *git.Worktree
 	stats    GlobalStats = GlobalStats{
-		ModificationsPerCommand: make(map[string]int),
+		ModificationsPerCommand: sync.Map{},
 	}
 )
 
@@ -52,6 +53,7 @@ func main() {
 		fmt.Fprintf(os.Stderr, "      You can use any valid Lua code, including if statements, loops, etc.\n")
 		fmt.Fprintf(os.Stderr, "      Glob patterns are supported for file selection (*.xml, data/**.xml, etc.)\n")
 	}
+	// TODO: Fix bed shitting when doing *.yml in barotrauma directory
 	flag.Parse()
 	args := flag.Args()
 
@@ -68,10 +70,27 @@ func main() {
 		return
 	}
 
+	if *utils.Filter != "" {
+		logger.Info("Filtering commands by name: %s", *utils.Filter)
+		commands = utils.FilterCommands(commands, *utils.Filter)
+		logger.Info("Filtered %d commands", len(commands))
+	}
+
 	// Then aggregate all the globs and deduplicate them
 	globs := utils.AggregateGlobs(commands)
 	logger.Debug("Aggregated %d globs before deduplication", utils.CountGlobsBeforeDedup(commands))
 
+	for _, command := range commands {
+		logger.Trace("Command: %s", command.Name)
+		logger.Trace("Regex: %s", command.Regex)
+		logger.Trace("Files: %v", command.Files)
+		logger.Trace("Lua: %s", command.Lua)
+		logger.Trace("Git: %t", command.Git)
+		logger.Trace("Reset: %t", command.Reset)
+		logger.Trace("Isolate: %t", command.Isolate)
+		logger.Trace("LogLevel: %s", command.LogLevel)
+	}
+
 	// Resolve all the files for all the globs
 	logger.Info("Found %d unique file patterns", len(globs))
 	files, err := utils.ExpandGLobs(globs)
@@ -91,7 +110,6 @@ func main() {
 		return
 	}
 
-	// TODO: Utilize parallel workers for this
 	// Then for each file run all commands associated with the file
 	workers := make(chan struct{}, *utils.ParallelFiles)
 	wg := sync.WaitGroup{}
@@ -100,7 +118,34 @@ func main() {
 	startTime := time.Now()
 	var fileMutex sync.Mutex
 
-	for file, commands := range associations {
+	// Create a map to store loggers for each command
+	commandLoggers := make(map[string]*logger.Logger)
+	for _, command := range commands {
+		// Create a named logger for each command
+		cmdName := command.Name
+		if cmdName == "" {
+			// If no name is provided, use a short version of the regex pattern
+			if len(command.Regex) > 20 {
+				cmdName = command.Regex[:17] + "..."
+			} else {
+				cmdName = command.Regex
+			}
+		}
+
+		// Parse the log level for this specific command
+		cmdLogLevel := logger.ParseLevel(command.LogLevel)
+
+		// Create a logger with the command name as a field
+		commandLoggers[command.Name] = logger.WithField("command", cmdName)
+		commandLoggers[command.Name].SetLevel(cmdLogLevel)
+
+		logger.Debug("Created logger for command %q with log level %s", cmdName, cmdLogLevel.String())
+	}
+
+	// This aggregation is great but what if one modification replaces the whole entire file?
+	// Shit......
+	// TODO: Add "Isolate" field to modifications which makes them run alone
+	for file, association := range associations {
 		workers <- struct{}{}
 		wg.Add(1)
 		logger.SafeGoWithArgs(func(args ...interface{}) {
@@ -115,39 +160,19 @@ func main() {
 				logger.Error("Failed to read file %q: %v", file, err)
 				return
 			}
-			logger.Trace("Loaded %d bytes of data for file %q", len(fileData), file)
 			fileDataStr := string(fileData)
 
-			// Aggregate all the modifications and execute them
+			fileDataStr, err = RunIsolateCommands(association, file, fileDataStr, &fileMutex)
-			modifications := []utils.ReplaceCommand{}
+			if err != nil {
-			for _, command := range commands {
+				logger.Error("Failed to run isolate commands for file %q: %v", file, err)
-				logger.Info("Processing file %q with command %q", file, command.Regex)
-				commands, err := processor.ProcessRegex(fileDataStr, command)
-				if err != nil {
-					logger.Error("Failed to process file %q with command %q: %v", file, command.Regex, err)
-					return
-				}
-				modifications = append(modifications, commands...)
-				// It is not guranteed that all the commands will be executed...
-				// TODO: Make this better
-				// We'd have to pass the map to executemodifications or something...
-				stats.ModificationsPerCommand[command.Name] += len(commands)
-			}
-
-			if len(modifications) == 0 {
-				logger.Info("No modifications found for file %q", file)
 				return
 			}
 
-			// Sort commands in reverse order for safe replacements
+			fileDataStr, err = RunOtherCommands(file, fileDataStr, association, &fileMutex, commandLoggers)
-			fileDataStr, count := utils.ExecuteModifications(modifications, fileDataStr)
+			if err != nil {
-
+				logger.Error("Failed to run other commands for file %q: %v", file, err)
-			fileMutex.Lock()
+				return
-			stats.ProcessedFiles++
+			}
-			stats.TotalModifications += count
-			fileMutex.Unlock()
-
-			logger.Info("Executed %d modifications for file %q", count, file)
 
 			err = os.WriteFile(file, []byte(fileDataStr), 0644)
 			if err != nil {
@@ -208,14 +233,95 @@ func main() {
 	// Print summary
 	if stats.TotalModifications == 0 {
 		logger.Warning("No modifications were made in any files")
-		fmt.Fprintf(os.Stderr, "No modifications were made in any files\n")
 	} else {
 		logger.Info("Operation complete! Modified %d values in %d/%d files",
 			stats.TotalModifications, stats.ProcessedFiles, stats.ProcessedFiles+stats.FailedFiles)
-		fmt.Printf("Operation complete! Modified %d values in %d/%d files\n",
+		sortedCommands := []string{}
-			stats.TotalModifications, stats.ProcessedFiles, stats.ProcessedFiles+stats.FailedFiles)
+		stats.ModificationsPerCommand.Range(func(key, value interface{}) bool {
-		for command, count := range stats.ModificationsPerCommand {
+			sortedCommands = append(sortedCommands, key.(string))
-			logger.Info("Command %q made %d modifications", command, count)
+			return true
+		})
+		sort.Strings(sortedCommands)
+
+		for _, command := range sortedCommands {
+			count, _ := stats.ModificationsPerCommand.Load(command)
+			if count.(int) > 0 {
+				logger.Info("\tCommand %q made %d modifications", command, count)
+			} else {
+				logger.Warning("\tCommand %q made no modifications", command)
+			}
 		}
 	}
 }
+
+func RunOtherCommands(file string, fileDataStr string, association utils.FileCommandAssociation, fileMutex *sync.Mutex, commandLoggers map[string]*logger.Logger) (string, error) {
+	// Aggregate all the modifications and execute them
+	modifications := []utils.ReplaceCommand{}
+	for _, command := range association.Commands {
+		// Use command-specific logger if available, otherwise fall back to default logger
+		cmdLogger := logger.Default
+		if cmdLog, ok := commandLoggers[command.Name]; ok {
+			cmdLogger = cmdLog
+		}
+
+		cmdLogger.Info("Processing file %q with command %q", file, command.Regex)
+		newModifications, err := processor.ProcessRegex(fileDataStr, command, file)
+		if err != nil {
+			return fileDataStr, fmt.Errorf("failed to process file %q with command %q: %w", file, command.Regex, err)
+		}
+		modifications = append(modifications, newModifications...)
+		// It is not guranteed that all the commands will be executed...
+		// TODO: Make this better
+		// We'd have to pass the map to executemodifications or something...
+		count, ok := stats.ModificationsPerCommand.Load(command.Name)
+		if !ok {
+			count = 0
+		}
+		stats.ModificationsPerCommand.Store(command.Name, count.(int)+len(newModifications))
+
+		cmdLogger.Debug("Command %q generated %d modifications", command.Name, len(newModifications))
+	}
+
+	if len(modifications) == 0 {
+		logger.Info("No modifications found for file %q", file)
+		return fileDataStr, nil
+	}
+
+	// Sort commands in reverse order for safe replacements
+	var count int
+	fileDataStr, count = utils.ExecuteModifications(modifications, fileDataStr)
+
+	fileMutex.Lock()
+	stats.ProcessedFiles++
+	stats.TotalModifications += count
+	fileMutex.Unlock()
+
+	logger.Info("Executed %d modifications for file %q", count, file)
+	return fileDataStr, nil
+}
+
+func RunIsolateCommands(association utils.FileCommandAssociation, file string, fileDataStr string, fileMutex *sync.Mutex) (string, error) {
+	for _, isolateCommand := range association.IsolateCommands {
+		logger.Info("Processing file %q with isolate command %q", file, isolateCommand.Regex)
+		modifications, err := processor.ProcessRegex(fileDataStr, isolateCommand, file)
+		if err != nil {
+			return fileDataStr, fmt.Errorf("failed to process file %q with isolate command %q: %w", file, isolateCommand.Regex, err)
+		}
+
+		if len(modifications) == 0 {
+			logger.Warning("No modifications found for file %q", file)
+			return fileDataStr, nil
+		}
+
+		var count int
+		fileDataStr, count = utils.ExecuteModifications(modifications, fileDataStr)
+
+		fileMutex.Lock()
+		stats.ProcessedFiles++
+		stats.TotalModifications += count
+		fileMutex.Unlock()
+
+		logger.Info("Executed %d isolate modifications for file %q", count, file)
+	}
+	return fileDataStr, nil
+}

processor/processor.go

@@ -2,11 +2,12 @@ package processor
 
 import (
 	"fmt"
+	"io"
+	"net/http"
 	"strings"
 
+	logger "git.site.quack-lab.dev/dave/cylogger"
 	lua "github.com/yuin/gopher-lua"
-
-	"modify/logger"
 )
 
 // Maybe we make this an interface again for the shits and giggles
@@ -249,6 +250,7 @@ modified = false
 
 	logger.Debug("Setting up Lua print function to Go")
 	L.SetGlobal("print", L.NewFunction(printToGo))
+	L.SetGlobal("fetch", L.NewFunction(fetch))
 	return nil
 }
 
@@ -324,3 +326,90 @@ func printToGo(L *lua.LState) int {
 	logger.Lua("%s", message)
 	return 0
 }
+
+func fetch(L *lua.LState) int {
+	// Get URL from first argument
+	url := L.ToString(1)
+	if url == "" {
+		L.Push(lua.LNil)
+		L.Push(lua.LString("URL is required"))
+		return 2
+	}
+
+	// Get options from second argument if provided
+	var method string = "GET"
+	var headers map[string]string = make(map[string]string)
+	var body string = ""
+
+	if L.GetTop() > 1 {
+		options := L.ToTable(2)
+		if options != nil {
+			// Get method
+			if methodVal := options.RawGetString("method"); methodVal != lua.LNil {
+				method = methodVal.String()
+			}
+
+			// Get headers
+			if headersVal := options.RawGetString("headers"); headersVal != lua.LNil {
+				if headersTable, ok := headersVal.(*lua.LTable); ok {
+					headersTable.ForEach(func(key lua.LValue, value lua.LValue) {
+						headers[key.String()] = value.String()
+					})
+				}
+			}
+
+			// Get body
+			if bodyVal := options.RawGetString("body"); bodyVal != lua.LNil {
+				body = bodyVal.String()
+			}
+		}
+	}
+
+	// Create HTTP request
+	req, err := http.NewRequest(method, url, strings.NewReader(body))
+	if err != nil {
+		L.Push(lua.LNil)
+		L.Push(lua.LString(fmt.Sprintf("Error creating request: %v", err)))
+		return 2
+	}
+
+	// Set headers
+	for key, value := range headers {
+		req.Header.Set(key, value)
+	}
+
+	// Make request
+	client := &http.Client{}
+	resp, err := client.Do(req)
+	if err != nil {
+		L.Push(lua.LNil)
+		L.Push(lua.LString(fmt.Sprintf("Error making request: %v", err)))
+		return 2
+	}
+	defer resp.Body.Close()
+
+	// Read response body
+	bodyBytes, err := io.ReadAll(resp.Body)
+	if err != nil {
+		L.Push(lua.LNil)
+		L.Push(lua.LString(fmt.Sprintf("Error reading response: %v", err)))
+		return 2
+	}
+
+	// Create response table
+	responseTable := L.NewTable()
+	responseTable.RawSetString("status", lua.LNumber(resp.StatusCode))
+	responseTable.RawSetString("statusText", lua.LString(resp.Status))
+	responseTable.RawSetString("ok", lua.LBool(resp.StatusCode >= 200 && resp.StatusCode < 300))
+	responseTable.RawSetString("body", lua.LString(string(bodyBytes)))
+
+	// Set headers in response
+	headersTable := L.NewTable()
+	for key, values := range resp.Header {
+		headersTable.RawSetString(key, lua.LString(values[0]))
+	}
+	responseTable.RawSetString("headers", headersTable)
+
+	L.Push(responseTable)
+	return 1
+}

processor/regex.go

@@ -1,16 +1,15 @@
 package processor
 
 import (
+	"cook/utils"
 	"fmt"
 	"regexp"
 	"strconv"
 	"strings"
 	"time"
 
+	logger "git.site.quack-lab.dev/dave/cylogger"
 	lua "github.com/yuin/gopher-lua"
-
-	"modify/logger"
-	"modify/utils"
 )
 
 type CaptureGroup struct {
@@ -21,7 +20,9 @@ type CaptureGroup struct {
 }
 
 // ProcessContent applies regex replacement with Lua processing
-func ProcessRegex(content string, command utils.ModifyCommand) ([]utils.ReplaceCommand, error) {
+// The filename here exists ONLY so we can pass it to the lua environment
+// It's not used for anything else
+func ProcessRegex(content string, command utils.ModifyCommand, filename string) ([]utils.ReplaceCommand, error) {
 	var commands []utils.ReplaceCommand
 	logger.Trace("Processing regex: %q", command.Regex)
 
@@ -31,6 +32,11 @@ func ProcessRegex(content string, command utils.ModifyCommand) ([]utils.ReplaceC
 	// We don't HAVE to do this multiple times for a pattern
 	// But it's quick enough for us to not care
 	pattern := resolveRegexPlaceholders(command.Regex)
+	// I'm not too happy about having to trim regex, we could have meaningful whitespace or newlines
+	// But it's a compromise that allows us to use | in yaml
+	// Otherwise we would have to escape every god damn pair of quotation marks
+	// And a bunch of other shit
+	pattern = strings.TrimSpace(pattern)
 	logger.Debug("Compiling regex pattern: %s", pattern)
 
 	patternCompileStart := time.Now()
@@ -79,6 +85,7 @@ func ProcessRegex(content string, command utils.ModifyCommand) ([]utils.ReplaceC
 			logger.Error("Error creating Lua state: %v", err)
 			return commands, fmt.Errorf("error creating Lua state: %v", err)
 		}
+		L.SetGlobal("file", lua.LString(filename))
 		// Hmm... Maybe we don't want to defer this..
 		// Maybe we want to close them every iteration
 		// We'll leave it as is for now
@@ -153,7 +160,11 @@ func ProcessRegex(content string, command utils.ModifyCommand) ([]utils.ReplaceC
 			}
 		}
 
-		captureGroups = deduplicateGroups(captureGroups)
+		// Use the DeduplicateGroups flag to control whether to deduplicate capture groups
+		if !command.NoDedup {
+			logger.Debug("Deduplicating capture groups as specified in command settings")
+			captureGroups = deduplicateGroups(captureGroups)
+		}
 
 		if err := toLua(L, captureGroups); err != nil {
 			logger.Error("Failed to set Lua variables: %v", err)
@@ -205,7 +216,7 @@ func ProcessRegex(content string, command utils.ModifyCommand) ([]utils.ReplaceC
 
 			for _, capture := range captureGroups {
 				if capture.Value == capture.Updated {
-					logger.Info("Capture group unchanged: %s", capture.Value)
+					logger.Info("Capture group unchanged: %s", LimitString(capture.Value, 50))
 					continue
 				}
 
@@ -250,7 +261,7 @@ func deduplicateGroups(captureGroups []*CaptureGroup) []*CaptureGroup {
 		}
 		if overlaps {
 			// We CAN just continue despite this fuckup
-			logger.Error("Overlapping capture group: %s", group.Name)
+			logger.Warning("Overlapping capture group: %s", group.Name)
 			continue
 		}
 		logger.Debug("No overlap detected for capture group: %s. Adding to deduplicated groups.", group.Name)
@@ -268,8 +279,6 @@ func resolveRegexPlaceholders(pattern string) string {
 	// Handle special pattern modifications
 	if !strings.HasPrefix(pattern, "(?s)") {
 		pattern = "(?s)" + pattern
-		// Use fmt.Printf for test compatibility
-		fmt.Printf("Pattern modified to include (?s): %s\n", pattern)
 	}
 
 	namedGroupNum := regexp.MustCompile(`(?:(\?<[^>]+>)(!num))`)

processor/regex_test.go

@@ -2,9 +2,8 @@ package processor
 
 import (
 	"bytes"
-	"fmt"
+	"cook/utils"
 	"io"
-	"modify/utils"
 	"os"
 	"regexp"
 	"strings"
@@ -38,7 +37,7 @@ func ApiAdaptor(content string, regex string, lua string) (string, int, int, err
 		LogLevel: "TRACE",
 	}
 
-	commands, err := ProcessRegex(content, command)
+	commands, err := ProcessRegex(content, command, "test")
 	if err != nil {
 		return "", 0, 0, err
 	}
@@ -979,29 +978,12 @@ func TestPatternWithoutPrefixGetsModified(t *testing.T) {
 	// Setup
 	pattern := "some.*pattern"
 
-	// Redirect stdout to capture fmt.Printf output
-	oldStdout := os.Stdout
-	r, w, _ := os.Pipe()
-	os.Stdout = w
-
 	// Execute function
 	result := resolveRegexPlaceholders(pattern)
 
-	// Restore stdout
-	w.Close()
-	os.Stdout = oldStdout
-
-	// Read captured output
-	var buf bytes.Buffer
-	io.Copy(&buf, r)
-	output := buf.String()
-
 	// Verify results
 	expectedPattern := "(?s)some.*pattern"
 	assert.Equal(t, expectedPattern, result, "Expected pattern to be %q, got %q", expectedPattern, result)
-
-	expectedOutput := fmt.Sprintf("Pattern modified to include (?s): %s\n", expectedPattern)
-	assert.Equal(t, expectedOutput, output, "Expected output message %q, got %q", expectedOutput, output)
 }
 
 // Empty string input returns "(?s)"
@@ -1009,29 +991,12 @@ func TestEmptyStringReturnsWithPrefix(t *testing.T) {
 	// Setup
 	pattern := ""
 
-	// Redirect stdout to capture fmt.Printf output
-	oldStdout := os.Stdout
-	r, w, _ := os.Pipe()
-	os.Stdout = w
-
 	// Execute function
 	result := resolveRegexPlaceholders(pattern)
 
-	// Restore stdout
-	w.Close()
-	os.Stdout = oldStdout
-
-	// Read captured output
-	var buf bytes.Buffer
-	io.Copy(&buf, r)
-	output := buf.String()
-
 	// Verify results
 	expectedPattern := "(?s)"
 	assert.Equal(t, expectedPattern, result, "Expected pattern to be %q, got %q", expectedPattern, result)
-
-	expectedOutput := fmt.Sprintf("Pattern modified to include (?s): %s\n", expectedPattern)
-	assert.Equal(t, expectedOutput, output, "Expected output message %q, got %q", expectedOutput, output)
 }
 
 // Named group with "!num" pattern gets replaced with proper regex for numbers

processor/test_helper.go

@@ -2,8 +2,9 @@ package processor
 
 import (
 	"io"
-	"modify/logger"
 	"os"
+
+	logger "git.site.quack-lab.dev/dave/cylogger"
 )
 
 func init() {
@@ -20,7 +21,7 @@ func init() {
 		if disableTestLogs {
 			// Create a new logger that writes to nowhere
 			silentLogger := logger.New(io.Discard, "", 0)
-			logger.DefaultLogger = silentLogger
+			logger.Default = silentLogger
 		}
 	}
 }

regression/regression_test.go

@@ -1,8 +1,8 @@
 package regression
 
 import (
-	"modify/processor"
+	"cook/processor"
-	"modify/utils"
+	"cook/utils"
 	"os"
 	"path/filepath"
 	"testing"
@@ -15,7 +15,7 @@ func ApiAdaptor(content string, regex string, lua string) (string, int, int, err
 		LogLevel: "TRACE",
 	}
 
-	commands, err := processor.ProcessRegex(content, command)
+	commands, err := processor.ProcessRegex(content, command, "test")
 	if err != nil {
 		return "", 0, 0, err
 	}

utils/file.go

@@ -0,0 +1,24 @@
+package utils
+
+import (
+	"os"
+	"path/filepath"
+	"strings"
+)
+
+func CleanPath(path string) string {
+	path = filepath.Clean(path)
+	path = strings.ReplaceAll(path, "\\", "/")
+	return path
+}
+
+func ToAbs(path string) string {
+	if filepath.IsAbs(path) {
+		return CleanPath(path)
+	}
+	cwd, err := os.Getwd()
+	if err != nil {
+		return CleanPath(path)
+	}
+	return CleanPath(filepath.Join(cwd, path))
+}

utils/flags.go

@@ -10,6 +10,6 @@ var (
 	// Deprecated
 	ResetFlag     = flag.Bool("reset", false, "Reset files to their original state")
 	LogLevel      = flag.String("loglevel", "INFO", "Set log level: ERROR, WARNING, INFO, DEBUG, TRACE")
-	Cookfile      = flag.String("cook", "**/cook.yml", "Path to cook config files, can be globbed")
 	ParallelFiles = flag.Int("P", 100, "Number of files to process in parallel")
+	Filter        = flag.String("filter", "", "Filter commands before running them")
 )

utils/git.go

@@ -2,13 +2,13 @@ package utils
 
 import (
 	"fmt"
-	"modify/logger"
 	"os"
 	"path/filepath"
 	"time"
 
-	"github.com/go-git/go-git/v5/plumbing/object"
+	logger "git.site.quack-lab.dev/dave/cylogger"
 	"github.com/go-git/go-git/v5"
+	"github.com/go-git/go-git/v5/plumbing/object"
 )
 
 var (

utils/modifycommand.go

@@ -2,9 +2,11 @@ package utils
 
 import (
 	"fmt"
-	"modify/logger"
 	"os"
+	"path/filepath"
+	"strings"
 
+	logger "git.site.quack-lab.dev/dave/cylogger"
 	"github.com/bmatcuk/doublestar/v4"
 	"gopkg.in/yaml.v3"
 )
@@ -17,6 +19,8 @@ type ModifyCommand struct {
 	Git      bool     `yaml:"git"`
 	Reset    bool     `yaml:"reset"`
 	LogLevel string   `yaml:"loglevel"`
+	Isolate  bool     `yaml:"isolate"`
+	NoDedup  bool     `yaml:"nodedup"`
 }
 type CookFile []ModifyCommand
 
@@ -36,29 +40,88 @@ func (c *ModifyCommand) Validate() error {
 	return nil
 }
 
-func AssociateFilesWithCommands(files []string, commands []ModifyCommand) (map[string][]ModifyCommand, error) {
+// Ehh.. Not much better... Guess this wasn't the big deal
+var matchesMemoTable map[string]bool = make(map[string]bool)
+
+func Matches(path string, glob string) (bool, error) {
+	key := fmt.Sprintf("%s:%s", path, glob)
+	if matches, ok := matchesMemoTable[key]; ok {
+		logger.Debug("Found match for file %q and glob %q in memo table", path, glob)
+		return matches, nil
+	}
+	matches, err := doublestar.Match(glob, path)
+	if err != nil {
+		return false, fmt.Errorf("failed to match glob %s with file %s: %w", glob, path, err)
+	}
+	matchesMemoTable[key] = matches
+	return matches, nil
+}
+
+func SplitPattern(pattern string) (string, string) {
+	static, pattern := doublestar.SplitPattern(pattern)
+
+	cwd, err := os.Getwd()
+	if err != nil {
+		return "", ""
+	}
+	if static == "" {
+		static = cwd
+	}
+	if !filepath.IsAbs(static) {
+		static = filepath.Join(cwd, static)
+		static = filepath.Clean(static)
+	}
+	static = strings.ReplaceAll(static, "\\", "/")
+	return static, pattern
+}
+
+type FileCommandAssociation struct {
+	File            string
+	IsolateCommands []ModifyCommand
+	Commands        []ModifyCommand
+}
+
+func AssociateFilesWithCommands(files []string, commands []ModifyCommand) (map[string]FileCommandAssociation, error) {
 	associationCount := 0
-	fileCommands := make(map[string][]ModifyCommand)
+	fileCommands := make(map[string]FileCommandAssociation)
+
 	for _, file := range files {
+		fileCommands[file] = FileCommandAssociation{
+			File:            file,
+			IsolateCommands: []ModifyCommand{},
+			Commands:        []ModifyCommand{},
+		}
 		for _, command := range commands {
 			for _, glob := range command.Files {
-				// TODO: Maybe memoize this function call
+				static, pattern := SplitPattern(glob)
-				matches, err := doublestar.Match(glob, file)
+				file = strings.ReplaceAll(file, "\\", "/")
+				file = strings.Replace(file, static+`/`, "", 1)
+				matches, err := Matches(file, pattern)
 				if err != nil {
 					logger.Trace("Failed to match glob %s with file %s: %v", glob, file, err)
 					continue
 				}
 				if matches {
 					logger.Debug("Found match for file %q and command %q", file, command.Regex)
-					fileCommands[file] = append(fileCommands[file], command)
+					association := fileCommands[file]
+
+					if command.Isolate {
+						association.IsolateCommands = append(association.IsolateCommands, command)
+					} else {
+						association.Commands = append(association.Commands, command)
+					}
+					fileCommands[file] = association
 					associationCount++
 				}
 			}
 		}
-		logger.Debug("Found %d commands for file %q", len(fileCommands[file]), file)
+		logger.Debug("Found %d commands for file %q", len(fileCommands[file].Commands), file)
-		if len(fileCommands[file]) == 0 {
+		if len(fileCommands[file].Commands) == 0 {
 			logger.Info("No commands found for file %q", file)
 		}
+		if len(fileCommands[file].IsolateCommands) > 0 {
+			logger.Info("Found %d isolate commands for file %q", len(fileCommands[file].IsolateCommands), file)
+		}
 	}
 	logger.Info("Found %d associations between %d files and %d commands", associationCount, len(files), len(commands))
 	return fileCommands, nil
@@ -69,6 +132,8 @@ func AggregateGlobs(commands []ModifyCommand) map[string]struct{} {
 	globs := make(map[string]struct{})
 	for _, command := range commands {
 		for _, glob := range command.Files {
+			glob = strings.Replace(glob, "~", os.Getenv("HOME"), 1)
+			glob = strings.ReplaceAll(glob, "\\", "/")
 			globs[glob] = struct{}{}
 		}
 	}
@@ -88,9 +153,11 @@ func ExpandGLobs(patterns map[string]struct{}) ([]string, error) {
 	logger.Debug("Expanding patterns from directory: %s", cwd)
 	for pattern := range patterns {
 		logger.Trace("Processing pattern: %s", pattern)
-		matches, _ := doublestar.Glob(os.DirFS(cwd), pattern)
+		static, pattern := SplitPattern(pattern)
+		matches, _ := doublestar.Glob(os.DirFS(static), pattern)
 		logger.Debug("Found %d matches for pattern %s", len(matches), pattern)
 		for _, m := range matches {
+			m = filepath.Join(static, m)
 			info, err := os.Stat(m)
 			if err != nil {
 				logger.Warning("Error getting file info for %s: %v", m, err)
@@ -112,69 +179,35 @@ func ExpandGLobs(patterns map[string]struct{}) ([]string, error) {
 func LoadCommands(args []string) ([]ModifyCommand, error) {
 	commands := []ModifyCommand{}
 
-	logger.Info("Loading commands from cook files: %s", *Cookfile)
+	logger.Info("Loading commands from cook files: %s", args)
-	newcommands, err := LoadCommandsFromCookFiles(*Cookfile)
+	for _, arg := range args {
-	if err != nil {
+		newcommands, err := LoadCommandsFromCookFiles(arg)
-		return nil, fmt.Errorf("failed to load commands from cook files: %w", err)
+		if err != nil {
-	}
+			return nil, fmt.Errorf("failed to load commands from cook files: %w", err)
-	logger.Info("Successfully loaded %d commands from cook files", len(newcommands))
-	commands = append(commands, newcommands...)
-	logger.Info("Now total commands: %d", len(commands))
-
-	logger.Info("Loading commands from arguments: %v", args)
-	newcommands, err = LoadCommandFromArgs(args)
-	if err != nil {
-		if len(commands) == 0 {
-			return nil, fmt.Errorf("failed to load commands from args: %w", err)
 		}
-		logger.Warning("Failed to load commands from args: %v", err)
+		logger.Info("Successfully loaded %d commands from cook iles", len(newcommands))
+		commands = append(commands, newcommands...)
+		logger.Info("Now total commands: %d", len(commands))
 	}
-	logger.Info("Successfully loaded %d commands from args", len(newcommands))
-	commands = append(commands, newcommands...)
-	logger.Info("Now total commands: %d", len(commands))
 
+	logger.Info("Loaded %d commands from all cook f", len(commands))
 	return commands, nil
 }
 
-func LoadCommandFromArgs(args []string) ([]ModifyCommand, error) {
+func LoadCommandsFromCookFiles(pattern string) ([]ModifyCommand, error) {
-	// Cannot reset without git, right?
+	static, pattern := SplitPattern(pattern)
-	if *ResetFlag {
-		*GitFlag = true
-	}
-
-	if len(args) < 3 {
-		return nil, fmt.Errorf("at least %d arguments are required", 3)
-	}
-
-	command := ModifyCommand{
-		Regex:    args[0],
-		Lua:      args[1],
-		Files:    args[2:],
-		Git:      *GitFlag,
-		Reset:    *ResetFlag,
-		LogLevel: *LogLevel,
-	}
-
-	if err := command.Validate(); err != nil {
-		return nil, fmt.Errorf("invalid command: %w", err)
-	}
-
-	return []ModifyCommand{command}, nil
-}
-
-func LoadCommandsFromCookFiles(s string) ([]ModifyCommand, error) {
-	cwd, err := os.Getwd()
-	if err != nil {
-		return nil, fmt.Errorf("failed to get current working directory: %w", err)
-	}
-
 	commands := []ModifyCommand{}
-	cookFiles, err := doublestar.Glob(os.DirFS(cwd), *Cookfile)
+	cookFiles, err := doublestar.Glob(os.DirFS(static), pattern)
 	if err != nil {
 		return nil, fmt.Errorf("failed to glob cook files: %w", err)
 	}
 
 	for _, cookFile := range cookFiles {
+		cookFile = filepath.Join(static, cookFile)
+		cookFile = filepath.Clean(cookFile)
+		cookFile = strings.ReplaceAll(cookFile, "\\", "/")
+		logger.Info("Loading commands from cook file: %s", cookFile)
+
 		cookFileData, err := os.ReadFile(cookFile)
 		if err != nil {
 			return nil, fmt.Errorf("failed to read cook file: %w", err)
@@ -206,3 +239,16 @@ func CountGlobsBeforeDedup(commands []ModifyCommand) int {
 	}
 	return count
 }
+
+func FilterCommands(commands []ModifyCommand, filter string) []ModifyCommand {
+	filteredCommands := []ModifyCommand{}
+	filters := strings.Split(filter, ",")
+	for _, cmd := range commands {
+		for _, filter := range filters {
+			if strings.Contains(cmd.Name, filter) {
+				filteredCommands = append(filteredCommands, cmd)
+			}
+		}
+	}
+	return filteredCommands
+}

utils/modifycommand_test.go

@@ -158,21 +158,24 @@ func TestAssociateFilesWithCommands(t *testing.T) {
 
 	// The associations expected depends on the implementation
 	// Let's check the actual associations and verify they make sense
-	for file, cmds := range associations {
+	for file, assoc := range associations {
-		t.Logf("File %s is associated with %d commands", file, len(cmds))
+		t.Logf("File %s is associated with %d commands and %d isolate commands", file, len(assoc.Commands), len(assoc.IsolateCommands))
-		for i, cmd := range cmds {
+		for i, cmd := range assoc.Commands {
 			t.Logf("  Command %d: Pattern=%s, Files=%v", i, cmd.Regex, cmd.Files)
 		}
+		for i, cmd := range assoc.IsolateCommands {
+			t.Logf("  Isolate Command %d: Pattern=%s, Files=%v", i, cmd.Regex, cmd.Files)
+		}
 
 		// Specific validation based on our file types
 		switch file {
 		case "file1.xml":
-			if len(cmds) < 1 {
+			if len(assoc.Commands) < 1 {
-				t.Errorf("Expected at least 1 command for file1.xml, got %d", len(cmds))
+				t.Errorf("Expected at least 1 command for file1.xml, got %d", len(assoc.Commands))
 			}
 			// Verify at least one command with *.xml pattern
 			hasXmlGlob := false
-			for _, cmd := range cmds {
+			for _, cmd := range assoc.Commands {
 				for _, glob := range cmd.Files {
 					if glob == "*.xml" {
 						hasXmlGlob = true
@@ -187,12 +190,12 @@ func TestAssociateFilesWithCommands(t *testing.T) {
 				t.Errorf("Expected command with *.xml glob for file1.xml")
 			}
 		case "file2.txt":
-			if len(cmds) < 1 {
+			if len(assoc.Commands) < 1 {
-				t.Errorf("Expected at least 1 command for file2.txt, got %d", len(cmds))
+				t.Errorf("Expected at least 1 command for file2.txt, got %d", len(assoc.Commands))
 			}
 			// Verify at least one command with *.txt pattern
 			hasTxtGlob := false
-			for _, cmd := range cmds {
+			for _, cmd := range assoc.Commands {
 				for _, glob := range cmd.Files {
 					if glob == "*.txt" {
 						hasTxtGlob = true
@@ -207,12 +210,12 @@ func TestAssociateFilesWithCommands(t *testing.T) {
 				t.Errorf("Expected command with *.txt glob for file2.txt")
 			}
 		case "subdir/file3.xml":
-			if len(cmds) < 1 {
+			if len(assoc.Commands) < 1 {
-				t.Errorf("Expected at least 1 command for subdir/file3.xml, got %d", len(cmds))
+				t.Errorf("Expected at least 1 command for subdir/file3.xml, got %d", len(assoc.Commands))
 			}
 			// Should match both *.xml and subdir/* patterns
 			matches := 0
-			for _, cmd := range cmds {
+			for _, cmd := range assoc.Commands {
 				for _, glob := range cmd.Files {
 					if glob == "*.xml" || glob == "subdir/*" {
 						matches++
@@ -266,137 +269,15 @@ func TestAggregateGlobs(t *testing.T) {
 	}
 }
 
-func TestLoadCommandFromArgs(t *testing.T) {
-	// Save original flags
-	origGitFlag := *GitFlag
-	origResetFlag := *ResetFlag
-	origLogLevel := *LogLevel
-
-	// Restore original flags after test
-	defer func() {
-		*GitFlag = origGitFlag
-		*ResetFlag = origResetFlag
-		*LogLevel = origLogLevel
-	}()
-
-	// Test cases
-	tests := []struct {
-		name        string
-		args        []string
-		gitFlag     bool
-		resetFlag   bool
-		logLevel    string
-		shouldError bool
-	}{
-		{
-			name:        "Valid command",
-			args:        []string{"pattern", "expr", "file1", "file2"},
-			gitFlag:     false,
-			resetFlag:   false,
-			logLevel:    "INFO",
-			shouldError: false,
-		},
-		{
-			name:        "Not enough args",
-			args:        []string{"pattern", "expr"},
-			gitFlag:     false,
-			resetFlag:   false,
-			logLevel:    "INFO",
-			shouldError: true,
-		},
-		{
-			name:        "With git flag",
-			args:        []string{"pattern", "expr", "file1"},
-			gitFlag:     true,
-			resetFlag:   false,
-			logLevel:    "INFO",
-			shouldError: false,
-		},
-		{
-			name:        "With reset flag (forces git flag)",
-			args:        []string{"pattern", "expr", "file1"},
-			gitFlag:     false,
-			resetFlag:   true,
-			logLevel:    "INFO",
-			shouldError: false,
-		},
-		{
-			name:        "With custom log level",
-			args:        []string{"pattern", "expr", "file1"},
-			gitFlag:     false,
-			resetFlag:   false,
-			logLevel:    "DEBUG",
-			shouldError: false,
-		},
-	}
-
-	for _, tc := range tests {
-		t.Run(tc.name, func(t *testing.T) {
-			// Set flags for this test case
-			*GitFlag = tc.gitFlag
-			*ResetFlag = tc.resetFlag
-			*LogLevel = tc.logLevel
-
-			commands, err := LoadCommandFromArgs(tc.args)
-
-			if tc.shouldError {
-				if err == nil {
-					t.Errorf("Expected an error but got none")
-				}
-				return
-			}
-
-			if err != nil {
-				t.Errorf("Unexpected error: %v", err)
-				return
-			}
-
-			if len(commands) != 1 {
-				t.Errorf("Expected 1 command, got %d", len(commands))
-				return
-			}
-
-			cmd := commands[0]
-
-			// Check command properties
-			if cmd.Regex != tc.args[0] {
-				t.Errorf("Expected pattern %q, got %q", tc.args[0], cmd.Regex)
-			}
-
-			if cmd.Lua != tc.args[1] {
-				t.Errorf("Expected LuaExpr %q, got %q", tc.args[1], cmd.Lua)
-			}
-
-			if len(cmd.Files) != len(tc.args)-2 {
-				t.Errorf("Expected %d files, got %d", len(tc.args)-2, len(cmd.Files))
-			}
-
-			// When reset is true, git should be true regardless of what was set
-			expectedGit := tc.gitFlag || tc.resetFlag
-			if cmd.Git != expectedGit {
-				t.Errorf("Expected Git flag %v, got %v", expectedGit, cmd.Git)
-			}
-
-			if cmd.Reset != tc.resetFlag {
-				t.Errorf("Expected Reset flag %v, got %v", tc.resetFlag, cmd.Reset)
-			}
-
-			if cmd.LogLevel != tc.logLevel {
-				t.Errorf("Expected LogLevel %q, got %q", tc.logLevel, cmd.LogLevel)
-			}
-		})
-	}
-}
-
 // Successfully unmarshal valid YAML data into ModifyCommand slice
 func TestLoadCommandsFromCookFileSuccess(t *testing.T) {
 	// Arrange
 	yamlData := []byte(`
 - name: command1
-  pattern: "*.txt"
+  regex: "*.txt"
   lua: replace
 - name: command2
-  pattern: "*.go"
+  regex: "*.go"
   lua: delete
 `)
 
@@ -420,11 +301,11 @@ func TestLoadCommandsFromCookFileWithComments(t *testing.T) {
 	yamlData := []byte(`
     # This is a comment
     - name: command1
-      pattern: "*.txt"
+      regex: "*.txt"
       lua: replace
     # Another comment
     - name: command2
-      pattern: "*.go"
+      regex: "*.go"
       lua: delete
     `)
 
@@ -445,7 +326,7 @@ func TestLoadCommandsFromCookFileWithComments(t *testing.T) {
 // Handle different YAML formatting styles (flow vs block)
 func TestLoadCommandsFromCookFileWithFlowStyle(t *testing.T) {
 	// Arrange
-	yamlData := []byte(`[ { name: command1, pattern: "*.txt", lua: replace }, { name: command2, pattern: "*.go", lua: delete } ]`)
+	yamlData := []byte(`[ { name: command1, regex: "*.txt", lua: replace }, { name: command2, regex: "*.go", lua: delete } ]`)
 
 	// Act
 	commands, err := LoadCommandsFromCookFile(yamlData)
@@ -496,13 +377,13 @@ func TestLoadCommandsFromCookFileWithMultipleEntries(t *testing.T) {
 	// Arrange
 	yamlData := []byte(`
 - name: command1
-  pattern: "*.txt"
+  regex: "*.txt"
   lua: replace
 - name: command2
-  pattern: "*.go"
+  regex: "*.go"
   lua: delete
 - name: command3
-  pattern: "*.md"
+  regex: "*.md"
   lua: append
 `)
 
@@ -553,155 +434,6 @@ func TestLoadCommandsFromCookFileLegitExample(t *testing.T) {
 	assert.Equal(t, "crewlayabout", commands[0].Name)
 }
 
-// Valid command with minimum 3 arguments returns a ModifyCommand slice with correct values
-func TestLoadCommandFromArgsWithValidArguments(t *testing.T) {
-	// Setup
-	oldGitFlag := GitFlag
-	oldResetFlag := ResetFlag
-	oldLogLevel := LogLevel
-
-	gitValue := true
-	resetValue := false
-	logLevelValue := "info"
-
-	GitFlag = &gitValue
-	ResetFlag = &resetValue
-	LogLevel = &logLevelValue
-
-	defer func() {
-		GitFlag = oldGitFlag
-		ResetFlag = oldResetFlag
-		LogLevel = oldLogLevel
-	}()
-
-	args := []string{"*.go", "return x", "file1.go", "file2.go"}
-
-	// Execute
-	commands, err := LoadCommandFromArgs(args)
-
-	// Assert
-	assert.NoError(t, err)
-	assert.Len(t, commands, 1)
-	assert.Equal(t, "*.go", commands[0].Regex)
-	assert.Equal(t, "return x", commands[0].Lua)
-	assert.Equal(t, []string{"file1.go", "file2.go"}, commands[0].Files)
-	assert.Equal(t, true, commands[0].Git)
-	assert.Equal(t, false, commands[0].Reset)
-	assert.Equal(t, "info", commands[0].LogLevel)
-}
-
-// Less than 3 arguments returns an error with appropriate message
-func TestLoadCommandFromArgsWithInsufficientArguments(t *testing.T) {
-	// Setup
-	oldGitFlag := GitFlag
-	oldResetFlag := ResetFlag
-	oldLogLevel := LogLevel
-
-	gitValue := false
-	resetValue := false
-	logLevelValue := "info"
-
-	GitFlag = &gitValue
-	ResetFlag = &resetValue
-	LogLevel = &logLevelValue
-
-	defer func() {
-		GitFlag = oldGitFlag
-		ResetFlag = oldResetFlag
-		LogLevel = oldLogLevel
-	}()
-
-	testCases := []struct {
-		name string
-		args []string
-	}{
-		{"empty args", []string{}},
-		{"one arg", []string{"*.go"}},
-		{"two args", []string{"*.go", "return x"}},
-	}
-
-	for _, tc := range testCases {
-		t.Run(tc.name, func(t *testing.T) {
-			// Execute
-			commands, err := LoadCommandFromArgs(tc.args)
-
-			// Assert
-			assert.Error(t, err)
-			assert.Nil(t, commands)
-			assert.Contains(t, err.Error(), "at least 3 arguments are required")
-		})
-	}
-}
-
-// Pattern, Lua, and Files fields are correctly populated from args
-func TestLoadCommandFromArgsPopulatesFieldsCorrectly(t *testing.T) {
-	// Setup
-	oldGitFlag := GitFlag
-	oldResetFlag := ResetFlag
-	oldLogLevel := LogLevel
-
-	gitValue := false
-	resetValue := false
-	logLevelValue := "debug"
-
-	GitFlag = &gitValue
-	ResetFlag = &resetValue
-	LogLevel = &logLevelValue
-
-	defer func() {
-		GitFlag = oldGitFlag
-		ResetFlag = oldResetFlag
-		LogLevel = oldLogLevel
-	}()
-
-	args := []string{"*.txt", "print('Hello')", "file1.txt", "file2.txt"}
-
-	// Execute
-	commands, err := LoadCommandFromArgs(args)
-
-	// Assert
-	assert.NoError(t, err)
-	assert.Len(t, commands, 1)
-	assert.Equal(t, "*.txt", commands[0].Regex)
-	assert.Equal(t, "print('Hello')", commands[0].Lua)
-	assert.Equal(t, []string{"file1.txt", "file2.txt"}, commands[0].Files)
-	assert.Equal(t, false, commands[0].Git)
-	assert.Equal(t, false, commands[0].Reset)
-	assert.Equal(t, "debug", commands[0].LogLevel)
-}
-
-// Git flag is set to true when ResetFlag is true
-func TestLoadCommandFromArgsSetsGitFlagWhenResetFlagIsTrue(t *testing.T) {
-	// Setup
-	oldGitFlag := GitFlag
-	oldResetFlag := ResetFlag
-	oldLogLevel := LogLevel
-
-	gitValue := false
-	resetValue := true
-	logLevelValue := "info"
-
-	GitFlag = &gitValue
-	ResetFlag = &resetValue
-	LogLevel = &logLevelValue
-
-	defer func() {
-		GitFlag = oldGitFlag
-		ResetFlag = oldResetFlag
-		LogLevel = oldLogLevel
-	}()
-
-	args := []string{"*.go", "return x", "file1.go", "file2.go"}
-
-	// Execute
-	commands, err := LoadCommandFromArgs(args)
-
-	// Assert
-	assert.NoError(t, err)
-	assert.Len(t, commands, 1)
-	assert.Equal(t, true, commands[0].Git)
-}
-
 // TODO: Figure out how to mock shit
 // Can't be asked doing that right now...
 // Successfully loads commands from multiple YAML files in the current directory

utils/replacecommand.go

@@ -2,8 +2,9 @@ package utils
 
 import (
 	"fmt"
-	"modify/logger"
 	"sort"
+
+	logger "git.site.quack-lab.dev/dave/cylogger"
 )
 
 type ReplaceCommand struct {