Ah oops, can't be local oopsie!!

It was adding backslashes and shit

isolate_test.go

@@ -84,7 +84,7 @@ END`
 	assert.Len(t, association.Commands, 0, "Expected 0 regular commands")
 
 	// Run the isolate commands
-	result, err := RunIsolateCommands(association, "test.txt", testContent)
+	result, err := RunIsolateCommands(association, "test.txt", testContent, false)
 	if err != nil && err != NothingToDo {
 		t.Fatalf("Failed to run isolate commands: %v", err)
 	}
@@ -162,7 +162,7 @@ END_SECTION2`
 	}
 
 	// Run the isolate commands
-	result, err := RunIsolateCommands(associations["test.txt"], "test.txt", testContent)
+	result, err := RunIsolateCommands(associations["test.txt"], "test.txt", testContent, false)
 	if err != nil && err != NothingToDo {
 		t.Fatalf("Failed to run isolate commands: %v", err)
 	}
@@ -234,7 +234,7 @@ func TestIsolateCommandsWithJSONMode(t *testing.T) {
 	}
 
 	// Run the isolate commands
-	result, err := RunIsolateCommands(associations["test.json"], "test.json", testContent)
+	result, err := RunIsolateCommands(associations["test.json"], "test.json", testContent, false)
 	if err != nil && err != NothingToDo {
 		t.Fatalf("Failed to run isolate commands: %v", err)
 	}
@@ -309,7 +309,7 @@ END_REGULAR`
 	assert.Len(t, association.Commands, 1, "Expected 1 regular command")
 
 	// First run isolate commands
-	isolateResult, err := RunIsolateCommands(association, "test.txt", testContent)
+	isolateResult, err := RunIsolateCommands(association, "test.txt", testContent, false)
 	if err != nil && err != NothingToDo {
 		t.Fatalf("Failed to run isolate commands: %v", err)
 	}
@@ -320,7 +320,7 @@ END_REGULAR`
 
 	// Then run regular commands
 	commandLoggers := make(map[string]*logger.Logger)
-	finalResult, err := RunOtherCommands("test.txt", isolateResult, association, commandLoggers)
+	finalResult, err := RunOtherCommands("test.txt", isolateResult, association, commandLoggers, false)
 	if err != nil && err != NothingToDo {
 		t.Fatalf("Failed to run regular commands: %v", err)
 	}
@@ -397,7 +397,7 @@ irons_spellbooks:chain_lightning
 	assert.Len(t, association.Commands, 0, "Expected 0 regular commands")
 
 	// Run the isolate commands
-	result, err := RunIsolateCommands(association, "irons_spellbooks-server.toml", testContent)
+	result, err := RunIsolateCommands(association, "irons_spellbooks-server.toml", testContent, false)
 	if err != nil && err != NothingToDo {
 		t.Fatalf("Failed to run isolate commands: %v", err)
 	}

main.go

@@ -12,8 +12,8 @@ import (
 	"cook/processor"
 	"cook/utils"
 
-	"github.com/spf13/cobra"
 	logger "git.site.quack-lab.dev/dave/cylogger"
+	"github.com/spf13/cobra"
 )
 
 //go:embed example_cook.toml
@@ -54,12 +54,16 @@ Features:
 - Parallel file processing
 - Command filtering and organization`,
 		PersistentPreRun: func(cmd *cobra.Command, args []string) {
-			CreateExampleConfig()
 			logger.InitFlag()
 			mainLogger.Info("Initializing with log level: %s", logger.GetLevel().String())
 			mainLogger.Trace("Full argv: %v", os.Args)
 		},
 		Run: func(cmd *cobra.Command, args []string) {
+			exampleFlag, _ := cmd.Flags().GetBool("example")
+			if exampleFlag {
+				CreateExampleConfig()
+				return
+			}
 			if len(args) == 0 {
 				cmd.Usage()
 				return
@@ -76,6 +80,7 @@ Features:
 	rootCmd.Flags().StringP("filter", "f", "", "Filter commands before running them")
 	rootCmd.Flags().Bool("json", false, "Enable JSON mode for processing JSON files")
 	rootCmd.Flags().BoolP("conv", "c", false, "Convert YAML files to TOML format")
+	rootCmd.Flags().BoolP("example", "e", false, "Generate example_cook.toml and exit")
 
 	// Set up examples in the help text
 	rootCmd.SetUsageTemplate(`Usage:{{if .Runnable}}

processor/processor.go

@@ -189,24 +189,122 @@ end
 
 ---@param table table
 ---@param depth number?
-function DumpTable(table, depth)
+function dump(table, depth)
 	if depth == nil then
 		depth = 0
 	end
 	if (depth > 200) then
-		print("Error: Depth > 200 in dumpTable()")
+		print("Error: Depth > 200 in dump()")
 		return
 	end
 	for k, v in pairs(table) do
 		if (type(v) == "table") then
 			print(string.rep("  ", depth) .. k .. ":")
-			DumpTable(v, depth + 1)
+			dump(v, depth + 1)
 		else
 			print(string.rep("  ", depth) .. k .. ": ", v)
 		end
 	end
 end
 
+--- Parses CSV text into rows and fields using a minimal RFC 4180 state machine.
+---
+--- Requirements/assumptions:
+--- - Input is a single string containing the entire CSV content.
+--- - Field separators are commas (,).
+--- - Newlines between rows may be "\n" or "\r\n". "\r\n" is treated as one line break.
+--- - Fields may be quoted with double quotes (").
+--- - Inside quoted fields, doubled quotes ("") represent a literal quote character.
+--- - No backslash escaping is supported (not part of RFC 4180).
+--- - Newlines inside quoted fields are preserved as part of the field.
+--- - Leading/trailing spaces are preserved; no trimming is performed.
+--- - Empty fields and empty rows are preserved.
+--- - The final row is emitted even if the text does not end with a newline.
+---
+--- Returns:
+--- - A table (array) of rows; each row is a table (array) of string fields.
+function parseCSV(csv)
+	local rows = {}
+	local fields = {}
+	local field = {}
+
+	local STATE_DEFAULT = 1
+	local STATE_IN_QUOTES = 2
+	local STATE_QUOTE_IN_QUOTES = 3
+	local state = STATE_DEFAULT
+
+	local i = 1
+	local len = #csv
+
+	while i <= len do
+		local c = csv:sub(i, i)
+
+		if state == STATE_DEFAULT then
+			if c == '"' then
+				state = STATE_IN_QUOTES
+				i = i + 1
+			elseif c == ',' then
+				table.insert(fields, table.concat(field))
+				field = {}
+				i = i + 1
+			elseif c == '\r' or c == '\n' then
+				table.insert(fields, table.concat(field))
+				field = {}
+				table.insert(rows, fields)
+				fields = {}
+				if c == '\r' and i < len and csv:sub(i + 1, i + 1) == '\n' then
+					i = i + 2
+				else
+					i = i + 1
+				end
+			else
+				table.insert(field, c)
+				i = i + 1
+			end
+		elseif state == STATE_IN_QUOTES then
+			if c == '"' then
+				state = STATE_QUOTE_IN_QUOTES
+				i = i + 1
+			else
+				table.insert(field, c)
+				i = i + 1
+			end
+		else -- STATE_QUOTE_IN_QUOTES
+			if c == '"' then
+				table.insert(field, '"')
+				state = STATE_IN_QUOTES
+				i = i + 1
+			elseif c == ',' then
+				table.insert(fields, table.concat(field))
+				field = {}
+				state = STATE_DEFAULT
+				i = i + 1
+			elseif c == '\r' or c == '\n' then
+				table.insert(fields, table.concat(field))
+				field = {}
+				table.insert(rows, fields)
+				fields = {}
+				state = STATE_DEFAULT
+				if c == '\r' and i < len and csv:sub(i + 1, i + 1) == '\n' then
+					i = i + 2
+				else
+					i = i + 1
+				end
+			else
+				state = STATE_DEFAULT
+				-- Don't increment i, reprocess character in DEFAULT state
+			end
+		end
+	end
+
+	if #field > 0 or #fields > 0 then
+		table.insert(fields, table.concat(field))
+		table.insert(rows, fields)
+	end
+
+	return rows
+end
+
 -- String to number conversion helper
 function num(str)
     return tonumber(str) or 0
@@ -531,12 +629,13 @@ STRING FUNCTIONS:
   format(s, ...)          - Formats string using Lua string.format
   trim(s)                 - Removes leading/trailing whitespace
   strsplit(inputstr, sep) - Splits string by separator (default: whitespace)
+  parseCSV(csv)           - Parses CSV text into rows of fields
   num(str)                - Converts string to number (returns 0 if invalid)
   str(num)                - Converts number to string
   is_number(str)          - Returns true if string is numeric
 
 TABLE FUNCTIONS:
-  DumpTable(table, depth) - Prints table structure recursively
+  dump(table, depth) - Prints table structure recursively
   isArray(t)         - Returns true if table is a sequential array
 
 HTTP FUNCTIONS:

processor/regex.go

@@ -53,7 +53,7 @@ func ProcessRegex(content string, command utils.ModifyCommand, filename string)
 		processRegexLogger.Error("Error compiling pattern %q: %v", pattern, err)
 		return commands, fmt.Errorf("error compiling pattern: %v", err)
 	}
-	processRegexLogger.Debug("Compiled pattern successfully in %v", time.Since(patternCompileStart))
+	processRegexLogger.Debug("Compiled pattern successfully in %v. Pattern: %s", time.Since(patternCompileStart), pattern)
 
 	// Same here, it's just string concatenation, it won't kill us
 	// More important is that we don't fuck up the command
@@ -77,7 +77,7 @@ func ProcessRegex(content string, command utils.ModifyCommand, filename string)
 	processRegexLogger.Debug("Pattern complexity estimate: %d", patternComplexity)
 
 	if len(indices) == 0 {
-		processRegexLogger.Warning("No matches found for regex: %q", pattern)
+		processRegexLogger.Warning("No matches found for regex: %s", pattern)
 		processRegexLogger.Debug("Total regex processing time: %v", time.Since(startTime))
 		return commands, nil
 	}
@@ -335,6 +335,9 @@ func resolveRegexPlaceholders(pattern string) string {
 	pattern = strings.ReplaceAll(pattern, "!any", `.*?`)
 	resolveLogger.Debug("Replaced !any with non-greedy wildcard")
 
+	pattern = strings.ReplaceAll(pattern, "\n", "\r?\n")
+	resolveLogger.Debug("Added optional carriage return support for Windows line endings")
+
 	repPattern := regexp.MustCompile(`!rep\(([^,]+),\s*(\d+)\)`)
 	// !rep(pattern, count) repeats the pattern n times
 	// Inserting !any between each repetition