Fix some tests that broke for some good reason I'm sure

isolate_test.go

@@ -84,7 +84,7 @@ END`
 	assert.Len(t, association.Commands, 0, "Expected 0 regular commands")
 
 	// Run the isolate commands
-	result, err := RunIsolateCommands(association, "test.txt", testContent)
+	result, err := RunIsolateCommands(association, "test.txt", testContent, false)
 	if err != nil && err != NothingToDo {
 		t.Fatalf("Failed to run isolate commands: %v", err)
 	}
@@ -162,7 +162,7 @@ END_SECTION2`
 	}
 
 	// Run the isolate commands
-	result, err := RunIsolateCommands(associations["test.txt"], "test.txt", testContent)
+	result, err := RunIsolateCommands(associations["test.txt"], "test.txt", testContent, false)
 	if err != nil && err != NothingToDo {
 		t.Fatalf("Failed to run isolate commands: %v", err)
 	}
@@ -234,7 +234,7 @@ func TestIsolateCommandsWithJSONMode(t *testing.T) {
 	}
 
 	// Run the isolate commands
-	result, err := RunIsolateCommands(associations["test.json"], "test.json", testContent)
+	result, err := RunIsolateCommands(associations["test.json"], "test.json", testContent, false)
 	if err != nil && err != NothingToDo {
 		t.Fatalf("Failed to run isolate commands: %v", err)
 	}
@@ -309,7 +309,7 @@ END_REGULAR`
 	assert.Len(t, association.Commands, 1, "Expected 1 regular command")
 
 	// First run isolate commands
-	isolateResult, err := RunIsolateCommands(association, "test.txt", testContent)
+	isolateResult, err := RunIsolateCommands(association, "test.txt", testContent, false)
 	if err != nil && err != NothingToDo {
 		t.Fatalf("Failed to run isolate commands: %v", err)
 	}
@@ -320,7 +320,7 @@ END_REGULAR`
 
 	// Then run regular commands
 	commandLoggers := make(map[string]*logger.Logger)
-	finalResult, err := RunOtherCommands("test.txt", isolateResult, association, commandLoggers)
+	finalResult, err := RunOtherCommands("test.txt", isolateResult, association, commandLoggers, false)
 	if err != nil && err != NothingToDo {
 		t.Fatalf("Failed to run regular commands: %v", err)
 	}
@@ -397,7 +397,7 @@ irons_spellbooks:chain_lightning
 	assert.Len(t, association.Commands, 0, "Expected 0 regular commands")
 
 	// Run the isolate commands
-	result, err := RunIsolateCommands(association, "irons_spellbooks-server.toml", testContent)
+	result, err := RunIsolateCommands(association, "irons_spellbooks-server.toml", testContent, false)
 	if err != nil && err != NothingToDo {
 		t.Fatalf("Failed to run isolate commands: %v", err)
 	}