Fixed a few issues with command bursts

(cherry picked from commit 9071960)

eos/effects/chargebonuswarfarecharge.py

@@ -24,7 +24,7 @@ def handler(fit, module, context, **kwargs):
 
         if id == 10:  # Shield Burst: Shield Harmonizing: Shield Resistance
             for damageType in ("Em", "Explosive", "Thermal", "Kinetic"):
-                fit.ship.boostItemAttr("shield%sDamageResonance" % damageType, value, stackingPenalties=True)
+                fit.ship.boostItemAttr("shield%sDamageResonance" % damageType, value)
 
         if id == 11:  # Shield Burst: Active Shielding: Repair Duration/Capacitor
             fit.modules.filteredItemBoost(

eos/effects/modulebonuswarfarelinkarmor.py

@@ -3,7 +3,7 @@
 # Used by:
 # Variations of module: Armor Command Burst I (2 of 2)
 type = "active"
-runTime = "late"
+runTime = "early"
 
 
 def handler(fit, module, context):

eos/effects/modulebonuswarfarelinkinfo.py

@@ -3,7 +3,7 @@
 # Used by:
 # Variations of module: Information Command Burst I (2 of 2)
 type = "active"
-runTime = "late"
+runTime = "early"
 
 
 def handler(fit, module, context):

eos/effects/modulebonuswarfarelinkshield.py

@@ -3,7 +3,7 @@
 # Used by:
 # Variations of module: Shield Command Burst I (2 of 2)
 type = "active"
-runTime = "late"
+runTime = "early"
 
 
 def handler(fit, module, context):

eos/effects/modulebonuswarfarelinkskirmish.py

@@ -3,7 +3,7 @@
 # Used by:
 # Variations of module: Skirmish Command Burst I (2 of 2)
 type = "active"
-runTime = "late"
+runTime = "early"
 
 
 def handler(fit, module, context):

eos/saveddata/fit.py

@@ -458,9 +458,9 @@ class Fit(object):
 
     def __runCommandBoosts(self, runTime="normal"):
         logger.debug("Applying gang boosts for %r", self)
-        for warfareBuffID, info in self.commandBonuses.iteritems():
+        for warfareBuffID in self.commandBonuses.keys():
             # Unpack all data required to run effect properly
-            effect_runTime, value, thing, effect = info
+            effect_runTime, value, thing, effect = self.commandBonuses[warfareBuffID]
 
             if runTime != effect_runTime:
                 continue
@@ -491,7 +491,7 @@ class Fit(object):
                 except:
                     pass
 
-        self.commandBonuses.clear()
+            del self.commandBonuses[warfareBuffID]
 
     def calculateModifiedAttributes(self, targetFit=None, withBoosters=False, dirtyStorage=None):
         timer = Timer(u'Fit: {}, {}'.format(self.ID, self.name), logger)